SNP Profiles of TSA 656 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CC	GG	TT	GG	CC	CC	AA	CT	AA	GG	AA	CC
1._RUQ_1016	_	_	AC	_	_	_	_	_	AA	_	AA	_	_	_
2._RUQ_1016	_	_	AC	GG	TT	_	CC	CC	AA	CT	_	_	AA	_
3._GC-08-257-8-25	TT	CC	AC	GG	CT	GG	CC	CC	AA	CT	AA	GG	AA	CG
4._GC-08-257-8-25	TT	CC	AC	GG	CT	GG	CC	CC	AA	CT	AA	GG	AA	CG
5._GC-08-257-8-25	TT	CC	AC	GG	CT	GG	CC	CC	AA	CT	AA	GG	AA	CG
6._GC-08-257-8-25	TT	CC	AC	GG	CT	GG	CC	CC	AA	CT	AA	GG	AA	CG
7._GC-08-257-8-25	TT	CC	AC	GG	CT	GG	CC	CC	AA	CT	AA	GG	AA	CG
8._TSA_656	_	_	AC	GG	CT	_	CC	CC	AA	CT	_	_	AA	_
9._TSA_656	_	_	AC	GG	CT	_	CC	CC	AA	CT	_	_	AA	_
10._TSA_656	_	_	AC	GG	CT	_	CC	CC	AA	CT	_	_	AA	_
11._TSA_656	_	_	AC	GG	CT	_	CC	CC	AA	CT	_	_	AA	_
12._TSA_656	_	_	AC	GG	CT	_	CC	CC	AA	CT	_	_	AA	_
13._GC-08-257-8-25	CT	AC	AC	GG	CT	GG	AC	CC	AA	CC	AG	GG	AA	CG
14._GC-08-257-8-25	CT	AC	AC	GG	CT	GG	AC	CC	AA	CC	AG	GG	AA	CG
15._GC-08-257-8-25	CT	AC	AC	GG	CT	GG	AC	CC	AA	CC	AG	GG	AA	CG
16._GC-08-257-8-25	CT	AC	AC	GG	CT	GG	AC	CC	AA	CC	AG	GG	AA	CG
17._GC-08-257-8-25	CT	AC	AC	GG	CT	GG	AC	CC	AA	CC	AG	GG	AA	CG
18._TSA_656	_	_	AC	GG	CT	_	AC	CC	AA	CC	_	_	AA	_
19._TSA_656	_	_	AC	GG	CT	_	AC	CC	AA	CC	_	_	AA	_
20._TSA_656	_	_	AC	GG	CT	_	AC	CC	AA	CC	_	_	AA	_
21._TSA_656	_	_	AC	GG	CT	_	AC	CC	AA	CC	_	_	AA	_
22._TSA_656	_	_	AC	GG	CT	_	AC	CC	AA	CC	_	_	AA	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	AA	CC	GG	GG	CC	CC	CT	TT	GG	AG	TT	CC	CC
1._RUQ_1016	_	AA	_	_	GG	CC	CC	_	TT	GG	AG	_	CC	CC
2._RUQ_1016	AG	AA	CC	GG	GG	CC	_	CT	_	GG	_	_	_	CC
3._GC-08-257-8-25	AG	AA	CC	GT	GG	CC	CC	CT	CT	GG	AG	TT	CC	CC
4._GC-08-257-8-25	AG	AA	CC	GT	GG	CC	CC	CT	CT	GG	AG	TT	CC	CC
5._GC-08-257-8-25	AG	AA	CC	GT	GG	CC	CC	CT	CT	GG	AG	TT	CC	CC
6._GC-08-257-8-25	AG	AA	CC	GT	GG	CC	CC	CT	CT	GG	AG	TT	CC	CC
7._GC-08-257-8-25	AG	AA	CC	GT	GG	CC	CC	CT	CT	GG	AG	TT	CC	CC
8._TSA_656	AG	AA	CC	GT	GG	CC	_	CT	_	GG	_	_	_	CC
9._TSA_656	AG	AA	CC	GT	GG	CC	_	CT	_	GG	_	_	_	CC
10._TSA_656	AG	AA	CC	GT	GG	CC	_	CT	_	GG	_	_	_	CC
11._TSA_656	AG	AA	CC	GT	GG	CC	_	CT	_	GG	_	_	_	CC
12._TSA_656	AG	AA	CC	GT	GG	CC	_	CT	_	GG	_	_	_	CC
13._GC-08-257-8-25	AG	AC	CC	GT	CG	AC	CC	TT	CT	GG	AA	TT	CC	CG
14._GC-08-257-8-25	AG	AC	CC	GT	CG	AC	CC	TT	CT	GG	AA	TT	CC	CG
15._GC-08-257-8-25	AG	AC	CC	GT	CG	AC	CC	TT	CT	GG	AA	TT	CC	CG
16._GC-08-257-8-25	AG	AC	CC	GT	CG	AC	CC	TT	CT	GG	AA	TT	CC	CG
17._GC-08-257-8-25	AG	AC	CC	GT	CG	AC	CC	TT	CT	GG	AA	TT	CC	CG
18._TSA_656	AG	AC	CC	GT	CG	AC	_	TT	_	GG	_	_	_	CG
19._TSA_656	AG	AC	CC	GT	CG	AC	_	TT	_	GG	_	_	_	CG
20._TSA_656	AG	AC	CC	GT	CG	AC	_	TT	_	GG	_	_	_	CG
21._TSA_656	AG	AC	CC	GT	CG	AC	_	TT	_	GG	_	_	_	CG
22._TSA_656	AG	AC	CC	GT	CG	AC	_	TT	_	GG	_	_	_	CG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CG	TT	GG	AA	CC	CC	GG	GG	TT	GT	CT	CC	TT	CG
1._RUQ_1016	_	_	GG	AA	CC	_	_	_	_	GT	_	_	_	CG
2._RUQ_1016	_	CT	_	AA	_	CT	_	_	_	GT	_	_	TT	CG
3._GC-08-257-8-25	CG	TT	GG	AA	CC	CC	GG	GG	TT	GT	TT	CC	CT	CG
4._GC-08-257-8-25	CG	TT	GG	AA	CC	CC	GG	GG	TT	GT	TT	CC	CT	CG
5._GC-08-257-8-25	CG	TT	GG	AA	CC	CC	GG	GG	TT	GT	TT	CC	CT	CG
6._GC-08-257-8-25	CG	TT	GG	AA	CC	CC	GG	GG	TT	GT	TT	CC	CT	CG
7._GC-08-257-8-25	CG	TT	GG	AA	CC	CC	GG	GG	TT	GT	TT	CC	CT	CG
8._TSA_656	_	TT	_	AA	_	CC	_	_	_	GT	_	_	CT	CG
9._TSA_656	_	TT	_	AA	_	CC	_	_	_	GT	_	_	CT	CG
10._TSA_656	_	TT	_	AA	_	CC	_	_	_	GT	_	_	CT	CG
11._TSA_656	_	TT	_	AA	_	CC	_	_	_	GT	_	_	CT	CG
12._TSA_656	_	TT	_	AA	_	CC	_	_	_	GT	_	_	CT	CG
13._GC-08-257-8-25	CG	CT	GG	AA	CT	CT	GT	GG	AT	GT	TT	CT	CC	CC
14._GC-08-257-8-25	CG	CT	GG	AA	CT	CT	GT	GG	AT	GT	TT	CT	CC	CC
15._GC-08-257-8-25	CG	CT	GG	AA	CT	CT	GT	GG	AT	GT	TT	CT	CC	CC
16._GC-08-257-8-25	CG	CT	GG	AA	CT	CT	GT	GG	AT	GT	TT	CT	CC	CC
17._GC-08-257-8-25	CG	CT	_	AA	CT	CT	GT	GG	AT	GT	TT	CT	CC	CC
18._TSA_656	_	CT	_	AA	_	CT	_	_	_	GT	_	_	CC	CC
19._TSA_656	_	CT	_	AA	_	CT	_	_	_	GT	_	_	CC	CC
20._TSA_656	_	CT	_	AA	_	CT	_	_	_	GT	_	_	CC	CC
21._TSA_656	_	CT	_	AA	_	CT	_	_	_	GT	_	_	CC	CC
22._TSA_656	_	CT	_	AA	_	CT	_	_	_	GT	_	_	CC	CC

	43
_Input profile	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_1016	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_1016	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._GC-08-257-8-25	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._GC-08-257-8-25	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._GC-08-257-8-25	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._GC-08-257-8-25	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._GC-08-257-8-25	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._TSA_656	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._TSA_656	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._TSA_656	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._TSA_656	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._TSA_656	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._GC-08-257-8-25	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._GC-08-257-8-25	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._GC-08-257-8-25	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._GC-08-257-8-25	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._GC-08-257-8-25	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._TSA_656	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._TSA_656	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
20._TSA_656	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
21._TSA_656	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
22._TSA_656	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: TSA_656 RUQ_1016

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._TSA_656 RUQ_1016

97.1 %
17 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

2._TSA_656 RUQ_1016

91.7 %
24 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._TSA_656 GC-08-257-8-25

90.7 %
43 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

4._TSA_656 GC-08-257-8-25

90.7 %
43 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

5._TSA_656 GC-08-257-8-25

90.7 %
43 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

6._TSA_656 GC-08-257-8-25

90.7 %
43 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

7._TSA_656 GC-08-257-8-25

90.7 %
43 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

8._TSA_656

89.6 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 10

Dapeng Zhang, 2016

9._TSA_656

89.6 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 6

Dapeng Zhang, 2016

10._TSA_656

89.6 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 3

Dapeng Zhang, 2016

11._TSA_656

89.6 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 2

Dapeng Zhang, 2016

12._TSA_656

89.6 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

13._TSA_656 GC-08-257-8-25

69.8 %
43 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

14._TSA_656 GC-08-257-8-25

69.8 %
43 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

15._TSA_656 GC-08-257-8-25

69.8 %
43 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

16._TSA_656 GC-08-257-8-25

69.8 %
43 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

17._TSA_656 GC-08-257-8-25

69 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

18._TSA_656

68.8 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 9

Dapeng Zhang, 2016

19._TSA_656

68.8 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 9

Dapeng Zhang, 2016

20._TSA_656

68.8 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 8

Dapeng Zhang, 2016

21._TSA_656

68.8 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 7

Dapeng Zhang, 2016

22._TSA_656

68.8 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 4

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP899	32	TcSNP998	33	TcSNP999	34	TcSNP1060	35	TcSNP1063
36	TcSNP1111	37	TcSNP1126	38	TcSNP1253	39	TcSNP1309	40	TcSNP1439
41	TcSNP1442	42	TcSNP1458	43	TcSNP1484